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2006 Archive, Vol. 3, No. 2

Functional diversity within protein superfamilies

James Casbon and Mansoor Saqi
2006-08-28, IB06 Article

MILAN - A medical information-system linking agents to metabolic networks

B. Prins and R. Hofestädt
2006-08-28, IB06 Article

The BioRS(TM) Integration and Retrieval System: An open system for distributed data integration

Andreas Kaps, Konstantin Dyshlevoi, Klaus Heumann, Ralf Jost, Ioannis Kontodinas, Martin Wolff and Jean Hani
2006-08-28, IB06 Article

Targeted Projection Pursuit Tool for Gene Expression Visualisation

Joe Faith and Michael Brockway
2006-08-28, IB06 Article

Prediction of transcription factor binding to DNA using rule induction methods

Mikael Huss and Karin Nordström
2006-08-28, IB06 Article

An assessment of machine and statistical learning approaches to inferring networks of protein-protein interactions

Fiona Browne, Haiying Wang, Huiru Zheng and Francisco Azuaje
2006-08-28, IB06 Article

Data Cleaning and Semantic Improvement in Biological Databases

Daniele Apiletti, Giulia Bruno, Elisa Ficarra and Elena Baralis
2006-08-28, IB06 Article

The implications for Bioinformatics of integration across physical scales

T.C. Hodgman, Y. Ugartechea-Chirino, G. Tansley and I. Dryden
2006-08-28, IB06 Article

Exact and Approximate Stochastic Simulations of the MAPK Pathway and Comparisons of Simulations Results

Vilda Purutcuoglu and Ernst Wit
2006-08-28, IB06 Article

Co-expressed gene group analysis (CGGA): An automatic tool for the interpretation of microarray experiments

Ricardo Martinez, Nicolas Pasquier, Claude Pasquier, Martine Collard and Lucero Lopez-Perez
2006-08-28, IB06 Article

A Graphical Notation to describe the Logical Interactions of Biological Pathways

Stuart L. Moodie, Anatoly Sorokin, Igor Groyanin and Peter Ghazal
2006-08-28, IB06 Article

Combining biomedical knowledge and transcriptomic data to extract new knowledge on genes

Emilie Guérin and Gwenaëlle Marquet, Julie Chabalier, Marie-Bérengère Troadec, Christiane Guguen-Guillouzo, Olivier Loréal, Anita Burgun and Fouzia Moussouni
2006-08-28, IB06 Article

BN++ - A Biological Information System

Jan Küntzer, Torsten Blum, Andreas Gerasch, Christina Backes, Andreas Hildebrandt, Michael Kaufmann, Oliver Kohlbacher and Hans-Peter Lenhof
2006-08-28, IB06 Article

Inference of Gene Coexpression Networks by Integrative Analysis across Microarray Experiments

Laura L. Elo, Riitta Lahesmaa and Tero Aittokallio
2006-08-28, IB06 Article

Multi-model inference of network properties from incomplete data

Michael P.H. Stumpf and Thomas Thorne
2006-08-28, IB06 Article

A First Step towards Learning which uORFs Regulate Gene Expression

Selpi, Christopher H. Bryant, Graham J.L. Kemp and Marija Cvijovic
2006-08-28, IB06 Article

Statistical Embedding in Complex Biosystems

Enrico Capobianco
2006-08-28, IB06 Article

Modeling Microarray Data: Interpreting and communicating the biological results

Y.E. Pittelkow and S.R.Wilson
2006-08-28, IB06 Article

Metabolite profiles as a reflection of physiological status -- a methodological validation

Matthias Steinfath, Dirk Repsilber, Manuela Hische, Nicolas Schauer, Alisdair R. Fernie and Joachim Selbig
2006-08-28, IB06 Article

InSilico Proteomics System: Integration and Application of Protein and Protein-Protein Interaction Data using Microsoft .NET

Wolfgang Straßer, Doris Siegl, Kamil Önder and Johann Bauer
2006-08-28, IB06 Article

BASIS: an internet resource for network modelling

Colin S. Gillespie, Darren J. Wilkinson, Daryl P. Shanley, Carole J. Proctor, Richard J. Boys and Thomas B.L. Kirkwood
2006-08-28, IB06 Article

Analysing Microarray Data using the Multi-functional Immune Ontologiser

Sabah Khalid, Karl Fraser, Mohsin Khan, Ping Wang, Xiaohui Liu and Suling Li
2006-08-28, IB06 Article

CoryneRegNet 2: An Integrative Bioinformatics Approach for Reconstruction and Comparison of Transcriptional Regulatory Networks in Prokaryotes

Jan Baumbach, Karina Brinkrolf, Tobias Wittkop, Andreas Tauch and Sven Rahmann
2006-08-28, IB06 Article

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