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2007 Archive, Vol. 4, No. 3

Reactome: An integrated expert model of human molecular processes and access toolkit

Bernard de Bono, Imre Vastrik, Peter DEustachio, Esther Schmidt, Gopal Gopinath, David Croft, Marc Gillespie, Bijay Jassal, Suzanna Lewis, Lisa Matthews, Guanming Wu, Ewan Birney, Lincoln Stein
2007-10-01, IB07 Article

A Tool for Evaluating Strategies for Grouping of Biological Data

Vaida Jakoniene, Patrick Lambrix
2007-10-01, IB07 Article

GeneBrowser: an approach for integration and functional classification of genomics data

Joel Arrais, Bruno Santos, João Fernandes, Laura Carreto, Manuel A.S. Santos, José Luis Oliveira
2007-10-01, IB07 Article

Integration of constraints documented in SBML, SBO, and the SBML Manual facilitates validation of biological models

Allyson L. Lister, Matthew Pocock, Anil Wipat
2007-10-01, IB07 Article

Mapping protein information to disease terminologies

Anaïs Mottaz, Yum L. Yip, Patrick Ruch, and Anne-Lise Veuthey
2007-10-01, IB07 Article

CIDA: An integrated software for the design, characterisation and global comparison of microarrays

Sabah Khalid, Mohsin Khan, Alistair Symonds, Karl Fraser, Ping Wang, Xiaohui Liu, Suling Li
2007-10-01, IB07 Article

Prediction of protein-protein interactions using one-class classification methods and integrating diverse biological data

José A. Reyes and David Gilbert
2007-10-01, IB07 Article

Functional and Transcriptional Coherency of Modules in the Human Protein Interaction Network

Matthias E. Futschik, Gautam Chaurasia, Anna Tschaut, Jenny Russ, M. Madan Babu and Hanspeter Herzel
2007-10-01, IB07 Article

IMS2 - An integrated medical software system for early lung cancer detection using ion mobility spectrometry data of human breath

Jan Baumbach, Alexander Bunkowski, Sita Lange, Timm Oberwahrenbrock, Nils Kleinbölting, Sven Rahmann, Jörg Ingo Baumbach
2007-10-01, IB07 Article

Supervised classification of combined copy number and gene expression data

S. Riccadonna, G. Jurman, S. Merler, S. Paoli, A. Quattrone, C. Furlanello
2007-10-01, IB07 Article

Mining for Single Nucleotide Polymorphisms in Expressed Sequence Tags

E. L. Souche, B. Hellemans, J. K. J. Van Houdt, A. Canario, S. Klages, R. Reinhardt and F. A. M. Volckaert
2007-10-01, IB07 Article

Analysis of integrated biomolecular networks using a generic network analysis suite

Matthias Oesterheld, Hans Werner Mewes, Volker Stümpflen
2007-10-01, IB07 Article

Community-based Linking of Biological Network Resources: Databases, Formats and Tools

Michael Telgkamp, Dirk Koschützki, Henning Schwöbbermeyer and Falk Schreiber
2007-10-01, IB07 Article

Exploring PSI-MI XML Collections Using DescribeX

Reza Samavi, Mariano Consens, Shahan Khatchadourian, Thodoros Topaloglou
2007-10-01, IB07 Article

A Methodology for Comparative Functional Genomics

Intikhab Alam, Mike Cornell, Darren M. Soanes, Cornelia Hedeler, Han Min Wong, Magnus Rattray, Simon J. Hubbard, Nicholas J. Talbot, Stephen G. Oliver and Norman W. Paton
2007-10-01, IB07 Article

Data Linkage Graph: computation, querying and knowledge discovery of life science database networks

Matthias Lange, Axel Himmelbach, Patrick Schweizer, Uwe Scholz
2007-10-01, IB07 Article

Monophyletic clustering and characterization of protein families

Jian Zhang, Zhiyuan Zhao, Jennifer Evershed, Guoying Li
2007-10-01, IB07 Article

Stochastic effects in a compartmental model for mitotic checkpoint regulation

Bashar Ibrahim, Peter Dittrich, Stephan Diekmann, Eberhard Schmitt
2007-10-01, IB07 Article

Developmental Anatomy Ontology of Zebrafish: an Integrative semantic framework

Mounia Belmamoune and Fons J. Verbeek
2007-10-01, IB07 Article

Defining Mapping Mashups with BioXMash

Ela Hunt, Joanna Jakubowska, Caroline Bösinger, and Moira C. Norrie
2007-10-01, IB07 Article

VINEdb: a data warehouse for integration and interactive exploration of life science data

Sridhar Hariharaputran, Thoralf Töpel, Björn Brockschmidt and Ralf Hofestädt
2007-10-01, IB07 Article

The OXL format for the exchange of integrated datasets

Jan Taubert, Klaus Peter Sieren, Matthew Hindle, Berend Hoekman, Rainer Winnenburg, Stephan Philippi, Chris Rawlings, Jacob Köhler
2007-10-01, IB07 Article

From MIN model to ordinary differential equations

A. Yartseva, R. Devillers, H. Klaudel, F. Képès
2007-10-01, IB07 Article

A High-Level Petri Net Framework for Genetic Regulatory Networks

Richard Banks and L. Jason Steggles
2007-10-01, IB07 Article

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