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2011 Archive, Vol. 8, No. 2

Integrating Protein-Protein Interaction Networks with Gene-Gene Co-Expression Networks improves Gene Signatures for Classifying Breast Cancer Metastasis

Erik B. van den Akker, Bas Verbruggen, Bas T. Heijmans, Marian Beekman, Joost N. Kok, Pieternella E. Slagboom and Marcel J. T. Reinders
2011-12-16, IB11 Article (Special Issue)

The SuBliMinaL Toolbox: automating steps in the reconstruction of metabolic networks

Neil Swainston, Kieran Smallbone, Pedro Mendes, Douglas Kell and Norman Paton
2011-11-18, IB11 Article (Special Issue)

Automatic extraction of microorganisms and their habitats from free text using text mining workflows

BalaKrishna Kolluru, Sirintra Nakjang, Robert P. Hirt, Anil Wipat and Sophia Ananiadou
2011-10-10, IB11 Article (Special Issue)

Identification of Common Carp Innate Immune Genes with Whole-Genome Sequencing and RNA-Seq Data

Yanju Zhang, Elia Stupka, Christiaan V. Henkel, Hans J. Jansen, Herman P. Spaink and Fons J. Verbeek
2011-09-12, IB11 Article (Special Issue)

Protein analysis tools and services at IBIVU

Bernd W. Brandt and Jaap Heringa
2011-09-08, IB11 Article (Special Issue)

A generic organ based ontology system, applied to vertebrate heart anatomy, development and physiology

Laura M. F. Bertens, Joris Slob and Fons J. Verbeek
2011-09-08, IB11 Article (Special Issue)

Bio-Search Computing: Integration and global ranking of bioinformatics search results

Marco Masseroli, Giorgio Ghisalberti and Stefano Ceri
2011-09-06, IB11 Article (Special Issue)

GMB: An Efficient Query Processor for Biological Data

Kamal Taha and Ramez Elmasri
2011-08-31, IB11 Article (Special Issue)

Putting Encyclopaedia Knowledge into Structural Form: Finite State Transducers Approach

Vesna Pajic
2011-08-18, IB11 Article (Special Issue)

Data partitioning enables the use of standard SOAP Web Services in genome-scale workflows

Pawel Sztromwasser, Pål Puntervoll and Kjell Petersen
2011-07-26, IB11 Article (Special Issue)

DBE2 - Management of experimental data for the VANTED system

Hendrik Mehlhorn and Falk Schreiber
2011-07-26, IB11 Article (Special Issue)

Integrative Visualization of Temporally Varying Medical Image Patterns

Jung Soh, Mei Xiao, Thao Do, Oscar Meruvia-Pastor and Christoph W. Sensen
2011-07-21, IB11 Article (Special Issue)

MADMAX – Management and analysis database for multiple ~omics experiments

Ke Lin, Harrie Kools, Philip J. de Groot, Anand K. Gavai, Ram K. Basnet, Feng Cheng, Jian Wu, Xiaowu Wang, Arjen Lommen, Guido J. E. K. Hooiveld, Guusje Bonnema, Richard G. F. Visser, Michael R. Muller and Jack A. M. Leunissen
2011-07-21, IB11 Article (Special Issue)

Life Sciences Data and Application Integration with B-Fabric

Can Türker, Fuat Akal and Ralph Schlapbach
2011-07-20, IB11 Article (Special Issue)

Web2.0 paves new ways for collaborative and exploratory analysis of chemical compounds in spectrometry data

Christian Loyek, Alexander Bunkowski, Wolfgang Vautz and Tim W. Nattkemper
2011-07-18, IB11 Article (Special Issue)

Database supported candidate search for Metabolite identification

Christian Hildebrandt, Sebastian Wolf and Steffen Neumann
2011-07-07, IB11 Article (Special Issue)

WIBL: Workbench for Integrative Biological Learning

Victor Lesk, Jan Taubert, Chris Rawlings, Stuart Dunbar and Stephen Muggleton
2011-06-27, IB11 Article (Special Issue)

CASSys: an integrated software-system for the interactive analysis of ChIP-seq data

Malik Alawi, Stefan Kurtz and Michael Beckstette
2011-06-21, IB11 Article (Special Issue)

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