PathJam: a new service for integrating biological pathway information

More Information | Back to archive
Full Text of this article Full article [PDF] (898,31 kB)
doi doi:10.2390/biecoll-jib-2010-147
submission August 19, 2010
last revision October 13, 2010
published October 28, 2010
NCBI PubMed PubMed ID 20980714

Daniel Glez-Peña, Miguel Reboiro-Jato, Rubén Domínguez, Gonzalo Gómez-López, David G Pisano and Florentino Fdez-Riverola

Correspondence should be addressed to:
Florentino Fdez-Riverola
Escuela Superior de Ingeniería Informática University of Vigo, Edificio Politécnico, Campus Universitario As Lagoas s/n, 32004 Ourense, Spain
se.ogivu@nullalorevir


Abstract

Biological pathways are crucial to much of the scientific research today including the study of specific biological processes related with human diseases. PathJam is a new comprehensive and freely accessible web-server application integrating scattered human pathway annotation from several public sources. The tool has been designed for both (i) being intuitive for wet-lab users providing statistical enrichment analysis of pathway annotations and (ii) giving support to the development of new integrative pathway applications. PathJam’s unique features and advantages include interactive graphs linking pathways and genes of interest, downloadable results in fully compatible formats, GSEA compatible output files and a standardized RESTful API.

Reference

Daniel Glez-Peña, Miguel Reboiro-Jato, Rubén Domínguez, Gonzalo Gómez-López, David G Pisano and Florentino Fdez-Riverola. PathJam: a new service for integrating biological pathway information. Journal of Integrative Bioinformatics, 7(1):147, 2010. Online Journal: http://journal.imbio.de/index.php?paper_id=147
imprint | sitemap | credits | top