Specifications of Standards in Systems and Synthetic Biology

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doi doi:10.2390/biecoll-jib-2015-258
submission August 12, 2015
published September 04, 2015

Falk Schreiber, Gary D. Bader, Martin Golebiewski, Michael Hucka, Benjamin Kormeier, Nicolas Le Novère, Chris Myers, David Nickerson, Björn Sommer, Dagmar Waltemath and Stephan Weise

Correspondence should be addressed to:
Falk Schreiber
Faculty of IT, Monash University, Clayton, Australia
ude.hsanom@nullrebierhcs.klaf


Abstract

Standards shape our everyday life. From nuts and bolts to electronic devices and technological processes, standardised products and processes are all around us. Standards have technological and economic benefits, such as making information exchange, production, and services more efficient. However, novel, innovative areas often either lack proper standards, or documents about standards in these areas are not available from a centralised platform or formal body (such as the International Standardisation Organisation). Systems and synthetic biology is a relatively novel area, and it is only in the last decade that the standardisation of data, information, and models related to systems and synthetic biology has become a community-wide effort. Several open standards have been established and are under continuous development as a community initiative. COMBINE, the ‘COmputational Modeling in BIology’ NEtwork has been established as an umbrella initiative to coordinate and promote the development of the various community standards and formats for computational models. There are yearly two meeting, HARMONY (Hackathons on Resources for Modeling in Biology), Hackathon-type meetings with a focus on development of the support for standards, and COMBINE forums, workshop-style events with oral presentations, discussion, poster, and breakout sessions for further developing the standards. For more information see http://co.mbine.org/. So far the different standards were published and made accessible through the standards’ web- pages or preprint services. The aim of this special issue is to provide a single, easily accessible and citable platform for the publication of standards in systems and synthetic biology. This special issue is intended to serve as a central access point to standards and related initiatives in systems and synthetic biology, it will be published annually to provide an opportunity for standard development groups to communicate updated specifications.

Reference

Falk Schreiber, Gary D. Bader, Martin Golebiewski, Michael Hucka, Benjamin Kormeier, Nicolas Le Novère, Chris Myers, David Nickerson, Björn Sommer, Dagmar Waltemath and Stephan Weise. Specifications of Standards in Systems and Synthetic Biology. Journal of Integrative Bioinformatics, 12(2):258, 2015. Online Journal: http://journal.imbio.de/index.php?paper_id=258
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